Mgr. Matěj Bezdíček, Ph.D.

2026

• Basecalling-free resistance gene identification using a hybrid transformer in raw nanopore signals

  JAKUBICEK Roman VOROCHTA Jevhenij JAKUBICKOVA Marketa BEZDÍČEK Matěj LENGEROVÁ Martina VITKOVA Helena

  Article in Periodical

  Frontiers in Microbiology, year: 2026, volume: 17, edition: February 2026, DOI

• Emergence and genomic characterization of hypervirulent ST23/K1 Klebsiella pneumoniae: local epidemiology and global context

  BEZDÍČEK Matěj JAKUBÍČKOVÁ Markéta BITUŠÍKOVÁ Viktória HOLUBOVÁ Ema VITKOVA Helena KOCMANOVÁ Iva VÍTKOVÁ Ivana ZDRAŽILOVÁ DUBSKÁ Lenka LENGEROVÁ Martina

  Article in Periodical

  Frontiers in Microbiology, year: 2026, volume: 17, edition: February 2026, DOI

2025

• Celogenomové sekvenování linezolid-rezistentního Enterococcus faecium: mechanismy rezistence a ohniska

  HOLUBOVÁ Ema BEZDÍČEK Matěj JAKUBÍČKOVÁ Markéta KOCMANOVÁ Iva KUBÁČKOVÁ Petra HODOVÁ Silvie LENGEROVÁ Martina

  Conference abstract

  Year: 2025, type: Conference abstract

• Developing molecular surveillance of SARS-CoV-2 in the Czech Republic (2021-2022)

  SURI Timotej PFEIFEROVA Lucie BEZDÍČEK Matěj SVATOŇ Jan HAMPL Vladimir BERKA Karel JIRINCOVA Helena LENGEROVÁ Martina KOLISKO Martin NAGY Alexander TACHEZY Ruth KOLAR Michal PACES Jan

  Article in Periodical

  Scientific Reports, year: 2025, volume: 15, edition: 1, DOI

• MethylomeMiner: A novel tool for high-resolution analysis of bacterial methylation patterns from nanopore sequencing

  JAKUBÍČKOVÁ Markéta SABATOVA Katerina ZBUDILOVA Michaela BEZDÍČEK Matěj LENGEROVÁ Martina VITKOVA Helena

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2025, volume: 27, edition: 2025, DOI

• Pigment Formation by Monascus pilosus DBM 4361 in Submerged Liquid Culture

  HUSAKOVA Marketa BEZDÍČEK Matěj BRANSKA Barbora SEDLAR Karel PATAKOVA Petra

  Article in Periodical

  Journal of Agricultural and Food Chemistry, year: 2025, volume: 73, edition: 42, DOI

• Whole-genome sequencing of linezolid-resistant Enterococcus faecium: unravelling resistance mechanisms and outbreaks.

  HOLUBOVÁ Ema BEZDÍČEK Matěj JAKUBÍČKOVÁ Markéta KOCMANOVÁ Iva KUBÁČKOVÁ Petra HODOVÁ Silvie LENGEROVÁ Martina

  Conference abstract

  Year: 2025, type: Conference abstract

2024

• Cultivation driven transcriptomic changes in the wild-type and mutant strains of Rhodospirillum rubrum

  JURECKOVA Katerina NYKRYNOVA Marketa SLANINOVA Eva FLEURIOT-BLITMAN Hugo AMSTUTZ Veronique HERMANKOVA Kristyna BEZDÍČEK Matěj MRAZOVA Katerina HRUBANOVA Kamila ZINN Manfred OBRUCA Stanislav SEDLAR Karel

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 23, edition: December 2024, DOI

• PILOTNÍ STUDIE SLEDOVÁNÍ ZMĚN SLOŽENÍ STŘEVNÍHO MIKROBIOMU U PACIENTŮ S HEMATOLOGICKOU MALIGNITOU POMOCÍ NANOPÓROVÉHO SEKVENOVÁNÍ

  BEZDÍČEK Matěj NYKRÝNOVÁ Markéta KABUT Tomáš WEINBERGEROVÁ Barbora REINEROVÁ Zuzana MAYER Jiří LENGEROVÁ Martina

  Conference abstract

  Year: 2024, type: Conference abstract

• Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.)

  PATAKOVA Petra VASYLKIVSKA Maryna SEDLAR Karel JURECKOVA Katerina BEZDÍČEK Matěj LOVECKA Petra BRANSKA Barbora KASTANEK Petr KROFTA Karel

  Article in Periodical

  Frontiers in Microbiology, year: 2024, volume: 15, edition: February 2024, DOI