Long-residency hydration, cation binding and dynamics of Loop E/Helix IV rRNA - L25 protein complex

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Authors

RÉBLOVÁ Kamila SPACKOVÁ Nadezda KOČA Jaroslav LEONTIS Neocles SPONER Jiri

Year of publication 2004
Type Article in Periodical
Magazine / Source Biophysical Journal
MU Faculty or unit

Faculty of Science

Citation
Field Biophysics
Keywords molecular dynamics simulations; Loop E motifs; non-Watson-Crick base pairs; ordered hydration; 5S rRNA.
Description Internal loops are common elements of RNA secondary structure. They often form binding sites for metals, proteins and other RNAs. To under-stand the effects of internal loops on RNA structure and function, we have carried out molecular dynamics simulations of 5S rRNA Loop E-Helix IV/protein L25.
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